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There are 24 glossary search results for:   channel




Definition:
Refers to a conformational change of a channel protein by which the channel goes from the open state to the inactive state. The inactive state refers to a conformational state in which ions are not allowed to permeate the channel pore. Thus, with respect to ion permeability, the inactive state is similar to the close state of the channel. Ions cannot permeate the channel pore either in the closed or inactive state. However, the channel assumes very distinct and different conformations in the inactive state and closed state.

See also:
Neuronal Action Potential - Important Features of the Neuronal Action Potential



Definition:
An integral membrane protein which contains a pore through which ions, water, or polar molecules permeate. For any given channel, the pore is usually very selective for the particular ion or molecule. For example, sodium (Na+) channels are very selective for Na+ over other cations.

The channel pore may be constitutively open, or it may be gated to the open state by various stimuli such as chemical ligands, voltage, temperature, or mechanical stimulation of the membrane.



Definition:
Amiloride inhibits epithelial Na+ channels (ENaC), and in doing so, it acts as a diuretic by inhibiting sodium reabsorption in the late distal convoluted tubules, connecting tubules, and collecting ducts in the kidneys.

Other resources:
Amiloride (Wikipedia)



Definition:
Proposed model for the inactivation of some voltage-gated ion channels. According to this model, after channel opening, the pore of the open channel is plugged by a globular cytoplasmic portion of the channel protein. The globular portion (ball of amino acids) is tethered to the rest of the protein by a linker part (chain of amino acids).

Related glossary terms/phrases:
Channel inactivation

See also:
Neuronal Action Potential - Important Features of the Neuronal Action Potential



Definition:
Refers to the concentration gradient of an ion or molecule. The concentration gradient may exist across a biological membrane, where the concentration is higher on one side of the membrane compared to the other side. Concentration gradient may also exist in a solution without an apparent barrier separating the area of higher concentration from the area of lower concentration. In both cases, the free energy that results from the concentration difference drives the movement of the ion/molcule from the area of higher concentration to the area of lower concentration. In free solution, the ion/molecule simply diffuses down its gradient. Movement across a biological membrane is more complicated and is a function of lipid solubility of the ion/molecule as well as the presence of channels or transport proteins that can allow the ion/molecule to cross the membrane (see Lipid Bilayer Permeability and Summary of Membrane Transport Processes).

Related glossary terms/phrases:
Electrical gradient
Electrochemical gradient



Definition:
An electrogenic transport process is one that leads to the translocation of net charge across the membrane. For example, ion channels such as Na+, K+, Ca2+, and Cl channels are electrogenic.

The Na+/K+ ATPase is electrogenic because for every ATP molecule hydrolyzed, 3 Na+ ions are transported out of the cell and 2 K+ ions are transported into the cell (leading to the translocation of one net positive charge out of the cell).

Many secondary active transporters are also electrogenic. For example, the Na+/glucose cotransporter (found in the small intestine and kidney proximal tubules), transports 2 Na+ ions and 1 glucose molecule into the cell across the plasma membrane (leading to the translocation of two net positive charges into the cell per transport cycle).



Definition:
Electrophysiology is the study of the electrical properties of biological macromolecules, cells, tissues, and organs. Electrical signals such as voltage and/or current are generally measured. Examples include measuring changes in the membrane voltage of excitable cells (e.g., neurons, muscle cells, and some endocrine cells) during an action potential. The current carrried by ions as they permeate the pore of ion channels can also be measured - both at the single-channel level (single-channel current), as well as the macroscopic current resulting from the activity of a population of channels. As another example, electrical measurements may involve recording voltage changes at the surface of the skin that result from the activity of skeletal muscles (electromyogram, EMG), cardiac myocytes (electrocardiogram, ECG), or neurons in the brain (electroencephalogram, EEG).



Abbreviation:
GABA

Definition:
GABA is an inhibitory amino acid neurotransmitter in the central and peripheral nervous systems. It is the most abundant inhibitory neurotransmitter in the nervous system. During embryonic development, GABA acts as an excitatory neurotransmitter at some central synapses. GABA is a classical neurotransmitter. Its action is exerted via the activation of GABAA, GABAB, and GABAC receptors. GABAA and GABAC receptors are ligand-gated chloride channels, whereas GABAB receptors are G protein coupled receptors. At GABAergic synapses, the action of GABA is terminated by GABA transporters (GAT), which transport GABA from the extracellular space in synaptic and extrasynaptic regions into neurons and glia.



Definition:
Glutamate (Glu, E) is one of the standard twenty (20) amino acids used by cells to synthesize peptides, polypeptides, and proteins. It has a molecular weight of 147.13 g/mol. Its side chain has a pKa of 4.07 and, therefore, glutamate has a net negative charge at physiological pH.

In the nervous system, glutamate is an excitatory amino acid neurotransmitter. In fact, glutamate is the most abundant excitatory neurotransmitter in the nervous system. Glutamate is a classical neurotransmitter. Its action is exerted via the activation of glutamate receptors (GluR), some of which are ligand-gated ion channels (ionotropic receptors), and some are G protein coupled receptors (GPCRs, metabotropic receptors). At glutamatergic synapses, the action of glutamate is terminated by glutamate transporters (EAAT, excitatory amino acid transporter), which transport glutamate from the extracellular space in synaptic and extrasynaptic regions into neurons and glia.



Definition:
Glycine (Gly, G) is one of the standard twenty (20) amino acids. At a molecular weight of 75.07 g/mol, it is the smallest of the 20 amino acids used by cells to synthesize peptides, polypeptides, and proteins.

In the nervous system, glycine is also an inhibitory amino acid neurotransmitter. Glycinergic synapses are most commonly found in brain stem and spinal cord circuits. Glycine is a classical neurotransmitter. Its action is exerted via the activation of ionotropic glycine receptors (GlyR), which are ligand-gated chloride channels. At glycinergic synapses, the action of glycine is terminated by glycine transporters (GlyT), which transport glycine from the extracellular space in synaptic and extrasynaptic regions into neurons and glia.



Definition:
The Hodgkin cycle represents a positive feedback loop in neurons, where an initial membrane depolarization from the resting value (∼ −70 mV) to the threshold value (∼ −50 mV) leads to rapid depolarization of the membrane potential to approach the equilibrium potential for Na+ (VNa ≈ +60 mV). The voltage-gated Na+ channels of neurons are responsible for the Hodgkin cycle.

See the figure depicting the Hodgkin cycle.

See also:
Important Features of the Neuronal Action Potential



Definition:
Not permeable. Not allowing the passage of substances. Impermeable refers to a property of a membrane or channel pore in preventing or restricting the passage of substances. For example, the lipid bilayer portion of biological membranes is highly impermeable to ions and large polar molecules.

See also permeable.

Related glossary terms/phrases:
Permeable
Permeability
Permeant
Impermeant

See also:
Lipid Bilayer Permeability



Definition:
Not permeant. Incapable of passing through or penetrating. Impermeant refers to the inability of a substance (e.g., ion or molecule) to cross (i.e., permeate or penetrate) a biological membrane or channel pore. For example, it can be said that ions are membrane impermeant.

See also permeant.

Related glossary terms/phrases:
Permeant
Permeability
Permeable
Impermeable

See also:
Lipid Bilayer Permeability



Definition:
Channel inactivation

See:
Channel inactivation



Definition:
Lidocaine is a local anesthetic and an antiarrhythmic drug. It is a commonly used local anesthetic for minor surgery and in dental procedures. Lidocaine is also used topically to relieve itching, burning, and pain from skin inflammations.

Lidocaine's mechanism of action is to block fast voltage-gated Na+ channels of neurons and cardiac myocytes.

Other names used for lidocaine are xylocaine and lignocaine.

See also:
Pharmacological Inhibition of Na+ and K+ Channels

Other resources:
Lidocaine (Wikipedia)



Definition:
Neurotoxins are chemical molecules that have an adverse effect on neuron function and, thus, disrupt the normal function of the nervous system. Neurotoxins could be small molecules or peptides and can be derived from a variety of invertebrate and vertebrate animals, as well as plant species.

The following is a short list of some examples of neurotoxins:

α-Bungarotoxin: A peptide neurotoxin that inhibits the nicotinic acetylcholine receptor.

Chlorotoxin: A peptide neurotoxin that inhibits chloride channels.

α-Conotoxin: A peptide neurotoxin that inhibits the nicotinic acetylcholine receptor.

δ-Conotoxin: A peptide neurotoxin that inhibits voltage-gated sodium channels.

w-Conotoxin: A peptide neurotoxin that inhibits N-type voltage-gated calcium channels.

Picrotoxin: Inhibits GABAA receptor chloride channels.

Tetrodotoxin: Inhibitor of neuronal voltage-gated sodium channels.



Definition:
Permeability refers to the ease with which molecules cross biological membranes. It may also refer to the ease with which ions or molecules pass through the pore of channel proteins.

Related glossary terms/phrases:
Permeable
Impermeable
Permeant
Impermeant

See also:
Lipid Bilayer Permeability



Definition:
Permeable refers to a property of a membrane or channel pore in allowing substances to pass through. For example, the lipid bilayer portion of biological membranes is highly permeable to fat-soluble molecules, but is not permeable to ions and large polar molecules.

See also impermeable.

Related glossary terms/phrases:
Impermeable
Permeability
Permeant
Impermeant

See also:
Lipid Bilayer Permeability



Definition:
Permeant refers to the ability of a substance (e.g., ion or molecule) to cross (i.e., permeate or penetrate) a biological membrane or channel pore. For example, it can be said that fat-soluble molecules are membrane permeant.

See also impermeant.

Related glossary terms/phrases:
Impermeant
Permeability
Permeable
Impermeable

See also:
Lipid Bilayer Permeability



Definition:
A local topical anesthetic.

Procaine's mechanism of action is to block fast voltage-gated Na+ channels of neurons.

See also:
Pharmacological Inhibition of Na+ and K+ Channels

Other resources:
Procaine (Wikipedia)



Definition:
Secretion refers to cellular release of substances (ions and small and large molecules) to the external environment of the cell. Secretion may be accomplished by exocytosis (fusion of transport vesicles with the plasma membrane and release of vesicle contents to the external environment), by transport of molecules across the plasma membrane (via the activity of transport proteins such as pumps, transporters, and channels), or by simple diffusion of fat-soluble molecules through the plasma membrane out of the cell.

For example, endocrine cells secrete hormone molecules that then enter the bloodstream. Neurons release (i.e., secrete) neurotransmitter molecules into the synaptic cleft. Some neurons secrete neurohormones; which similar to hormones, travel in the bloodstream to reach distant target cells. Epithelial cells secrete molecules in luminal spaces, such as digestive enzymes secreted into the digestive tract by various cell types.

See also:
Excretion



Abbreviation:
TEA

Definition:
An inhibitor of voltage-gated potassium (K+) channels.

TEA is a quaternary ammonium cation (positively charged ion). It is also commonly used as a cation replacement for sodium (Na+) in physiological buffers used in ion replacement experiments.

See also:
Pharmacological Inhibition of Na+ and K+ Channels



Abbreviation:
TTX

Definition:
Inhibitor of fast voltage-gated sodium (Na+) channels of neurons and muscle cells. It is an extremely potent and toxic neurotoxin.

See also:
Pharmacological Inhibition of Na+ and K+ Channels

Other resources:
Tetrodotoxin (Wikipedia)



Definition:
The membrane voltage that must be reached in an excitable cell (e.g., neuron or muscle cell) during a depolarization in order to generate an action potential. At the threshold voltage, voltage-gated channels become activated. Threshold is approximately −50 to −40 mV in most excitable cells.

Related glossary terms/phrases:
Sub-threshold
Supra-threshold

See also:
Neuronal Action Potential - Introduction









Posted: Sunday, March 31, 2013
Last updated: Friday, August 28, 2015